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Bra008294 protein (Brassica rapa) - STRING interaction network
"Bra008294" - AT1G77140 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008294AT1G77140 (E=4e-308) VPS45, ATVPS45 | VPS45 (VACUOLAR PROTEIN SORTING 45); protein transporter (569 aa)    
Predicted Functional Partners:
Bra036287
AT4G02195 (E=4e-143) SYP42, TLG2B, ATSYP42, ATTLG2B | SYP42 (SYNTAXIN OF PLANTS 42); SNAP receptor (288 aa)
     
  0.971
Bra040527
AT5G26980 (E=7e-147) SYP41, ATSYP41, ATTLG2A | SYP41 (SYNTAXIN OF PLANTS 41); SNAP receptor (318 aa)
     
  0.968
Bra039417
AT5G26980 (E=4e-149) SYP41, ATSYP41, ATTLG2A | SYP41 (SYNTAXIN OF PLANTS 41); SNAP receptor (317 aa)
     
  0.968
Bra032848
AT5G05760 (E=1e-019) SYP31, ATSED5, ATSYP31, SED5 | SYP31 (SYNTAXIN OF PLANTS 31); SNAP receptor (108 aa)
     
  0.964
Bra028370
AT3G24350 (E=5e-101) SYP32, ATSYP32 | SYP32 (SYNTAXIN OF PLANTS 32); SNAP receptor (297 aa)
     
  0.964
Bra015036
AT3G24350 (E=6e-129) SYP32, ATSYP32 | SYP32 (SYNTAXIN OF PLANTS 32); SNAP receptor (344 aa)
     
  0.964
Bra005866
AT5G05760 (E=9e-132) SYP31, ATSED5, ATSYP31, SED5 | SYP31 (SYNTAXIN OF PLANTS 31); SNAP receptor (340 aa)
     
  0.964
Bra001945
AT3G24350 (E=4e-108) SYP32, ATSYP32 | SYP32 (SYNTAXIN OF PLANTS 32); SNAP receptor (367 aa)
     
  0.964
Bra008592
AT5G16830 (E=1e-096) SYP21, ATSYP21, PEP12, ATPEP12, PEP12P | SYP21 (SYNTAXIN OF PLANTS 21); SNAP receptor (279 aa)
     
  0.962
Bra006372
AT5G16830 (E=3e-072) SYP21, ATSYP21, PEP12, ATPEP12, PEP12P | SYP21 (SYNTAXIN OF PLANTS 21); SNAP receptor (276 aa)
     
  0.962
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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