STRINGSTRING
Bra008301 protein (Brassica rapa) - STRING interaction network
"Bra008301" - AT1G21610 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008301AT1G21610 (E=2e-193) | wound-responsive family protein (657 aa)    
Predicted Functional Partners:
Bra011385
AT4G32820 (E=0.0) | binding (1833 aa)
     
   
  0.617
Bra018532
AT1G56220 (E=6e-049) | dormancy/auxin associated family protein (127 aa)
           
  0.573
Bra000867
AT1G56220 (E=5e-062) | dormancy/auxin associated family protein (131 aa)
           
  0.573
Bra036244
AT1G56220 (E=1e-044) | dormancy/auxin associated family protein (121 aa)
           
  0.483
Bra030065
AT1G27880 (E=0.0) | ATP-dependent DNA helicase, putative (972 aa)
     
   
  0.411
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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