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Bra008306 protein (Brassica rapa) - STRING interaction network
"Bra008306" - AT1G77410 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008306AT1G77410 (E=2e-052) BGAL16 | BGAL16 (beta-galactosidase 16); beta-galactosidase/ catalytic/ cation binding / sugar binding (158 aa)    
Predicted Functional Partners:
Bra014749
AT3G55400 (E=4e-277) OVA1 | OVA1 (OVULE ABORTION 1); ATP binding / aminoacyl-tRNA ligase/ methionine-tRNA ligase/ nucleotide binding (593 aa)
       
      0.891
Bra007159
AT3G55400 (E=2e-293) OVA1 | OVA1 (OVULE ABORTION 1); ATP binding / aminoacyl-tRNA ligase/ methionine-tRNA ligase/ nucleotide binding (610 aa)
       
      0.891
Bra014816
AT3G54440 (E=0.0) | glycoside hydrolase family 2 protein (1104 aa)
       
  0.751
Bra027060
AT3G17940 (E=1e-033) | aldose 1-epimerase family protein (150 aa)
       
  0.655
Bra022264
AT3G17940 (E=3e-163) | aldose 1-epimerase family protein ; Converts alpha-aldose to the beta-anomer (343 aa)
       
  0.655
Bra021285
AT3G17940 (E=2e-168) | aldose 1-epimerase family protein ; Converts alpha-aldose to the beta-anomer (342 aa)
       
  0.655
Bra018112
AT3G47800 (E=9e-181) | aldose 1-epimerase family protein ; Converts alpha-aldose to the beta-anomer (357 aa)
       
  0.655
Bra008718
AT5G15140 (E=1e-176) | aldose 1-epimerase family protein (500 aa)
       
  0.655
Bra006284
AT5G15140 (E=8e-161) | aldose 1-epimerase family protein (442 aa)
       
  0.655
Bra001012
AT3G01260 (E=6e-126) | aldose 1-epimerase/ carbohydrate binding / catalytic/ isomerase (438 aa)
       
  0.655
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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