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Bra008307 protein (Brassica rapa) - STRING interaction network
"Bra008307" - AT1G77420 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008307AT1G77420 (E=1e-192) | hydrolase, alpha/beta fold family protein (382 aa)    
Predicted Functional Partners:
Bra035181
AT1G80460 (E=6e-290) NHO1, GLI1 | NHO1 (nonhost resistance to P. s. phaseolicola 1); carbohydrate kinase/ glycerol kinase (522 aa)
       
  0.940
Bra003567
AT1G80460 (E=1e-289) NHO1, GLI1 | NHO1 (nonhost resistance to P. s. phaseolicola 1); carbohydrate kinase/ glycerol kinase (522 aa)
       
  0.940
Bra038905
AT3G51520 (E=8e-135) | diacylglycerol acyltransferase family (318 aa)
       
  0.933
Bra009491
AT5G04040 (E=0.0) SDP1 | SDP1 (SUGAR-DEPENDENT1); triacylglycerol lipase (1425 aa)
   
 
  0.894
Bra032757
AT4G14070 (E=0.0) AAE15 | AAE15 (acyl-activating enzyme 15); long-chain-fatty-acid-[acyl-carrier-protein] ligase (719 aa)
         
  0.845
Bra001919
AT3G23790 (E=0.0) | AMP-binding protein, putative (718 aa)
         
  0.845
Bra032284
AT1G49430 (E=0.0) LRD2, LACS2 | LACS2 (LONG-CHAIN ACYL-COA SYNTHETASE 2); long-chain-fatty-acid-CoA ligase (666 aa)
         
  0.842
Bra035259
AT4G11030 (E=0.0) | long-chain-fatty-acid--CoA ligase, putative / long-chain acyl-CoA synthetase, putative (666 aa)
         
  0.823
Bra027700
AT1G64400 (E=0.0) | long-chain-fatty-acid--CoA ligase, putative / long-chain acyl-CoA synthetase, putative (826 aa)
         
  0.823
Bra013735
AT4G23850 (E=0.0) | long-chain-fatty-acid--CoA ligase / long-chain acyl-CoA synthetase (623 aa)
         
  0.823
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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