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Bra008309 protein (Brassica rapa) - STRING interaction network
"Bra008309" - AT1G77450 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008309AT1G77450 (E=2e-121) anac032 | anac032 (Arabidopsis NAC domain containing protein 32); transcription factor (260 aa)    
Predicted Functional Partners:
Bra018998
AT1G52890 (E=3e-148) ANAC019 | ANAC019 (Arabidopsis NAC domain containing protein 19); transcription factor (383 aa)
     
 
0.522
Bra039503
AT5G37260 (E=1e-090) RVE2, CIR1 | RVE2 (REVEILLE 2); DNA binding / transcription factor (333 aa)
       
      0.489
Bra031371
AT1G22190 (E=1e-071) | AP2 domain-containing transcription factor, putative (260 aa)
       
      0.489
Bra000052
AT2G38310 (E=2e-101) | unknown protein (207 aa)
       
      0.489
Bra013945
AT4G26080 (E=2e-182) ABI1 | ABI1 (ABA INSENSITIVE 1); calcium ion binding / protein serine/threonine phosphatase (425 aa)
     
      0.404
Bra010441
AT4G26080 (E=4e-191) ABI1 | ABI1 (ABA INSENSITIVE 1); calcium ion binding / protein serine/threonine phosphatase (422 aa)
     
      0.404
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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