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Bra008318 protein (Brassica rapa) - STRING interaction network
"Bra008318" - AT1G77620 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008318AT1G77620 (E=2e-013) | nucleoside-triphosphatase/ nucleotide binding (248 aa)    
Predicted Functional Partners:
Bra026217
AT1G14460 (E=0.0) | DNA polymerase-related (1025 aa)
   
  0.987
Bra025061
AT5G45720 (E=1e-212) | ATP binding / DNA binding / DNA-directed DNA polymerase/ nucleoside-triphosphatase/ nucleotide binding (750 aa)
   
  0.987
Bra019208
AT4G24790 (E=1e-295) | ATP binding / DNA binding / DNA-directed DNA polymerase (902 aa)
   
  0.987
Bra031571
AT1G07370 (E=5e-142) PCNA1 | PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN); DNA binding / DNA polymerase processivity factor/ protein binding ; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase’s processibility during elongation of the leading strand (263 aa)
   
  0.983
Bra018377
AT1G07370 (E=2e-144) PCNA1 | PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN); DNA binding / DNA polymerase processivity factor/ protein binding ; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase’s processibility during elongation of the leading strand (263 aa)
   
  0.983
Bra020577
AT5G27740 (E=5e-178) EMB2775 | EMB2775 (EMBRYO DEFECTIVE 2775); DNA binding / nucleoside-triphosphatase/ nucleotide binding (353 aa)
     
  0.978
Bra009945
AT5G27740 (E=8e-187) EMB2775 | EMB2775 (EMBRYO DEFECTIVE 2775); DNA binding / nucleoside-triphosphatase/ nucleotide binding (354 aa)
     
  0.978
Bra013317
AT4G18770 (E=2e-026) MYB98, AtMYB98 | MYB98 (myb domain protein 98); DNA binding / transcription factor (742 aa)
     
  0.978
Bra026593
AT2G02480 (E=5e-043) STI | STI (STICHEL); ATP binding / DNA binding / DNA-directed DNA polymerase (373 aa)
     
  0.978
Bra017941
AT1G21690 (E=1e-180) emb1968 | emb1968 (embryo defective 1968); ATP binding / ATPase/ DNA binding / DNA clamp loader/ nucleoside-triphosphatase/ nucleotide binding (339 aa)
     
  0.978
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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