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Bra008320 protein (Brassica rapa) - STRING interaction network
"Bra008320" - AT1G77630 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008320AT1G77630 (E=2e-168) | peptidoglycan-binding LysM domain-containing protein (422 aa)    
Predicted Functional Partners:
Bra027929
AT1G56570 (E=1e-312) | pentatricopeptide (PPR) repeat-containing protein (604 aa)
           
  0.585
Bra031293
AT3G21630 (E=2e-277) CERK1, LYSM RLK1 | CERK1 (CHITIN ELICITOR RECEPTOR KINASE 1); kinase/ receptor signaling protein/ transmembrane receptor protein kinase (616 aa)
           
  0.574
Bra040550
AT3G01840 (E=2e-211) | protein kinase family protein (599 aa)
           
  0.540
Bra006560
AT5G20480 (E=0.0) EFR | EFR (EF-TU RECEPTOR); ATP binding / kinase/ protein serine/threonine kinase (1032 aa)
           
  0.452
Bra002305
AT5G20480 (E=0.0) EFR | EFR (EF-TU RECEPTOR); ATP binding / kinase/ protein serine/threonine kinase (1031 aa)
           
  0.452
Bra006469
AT5G18610 (E=4e-257) | protein kinase family protein (615 aa)
           
  0.412
Bra002172
AT5G18610 (E=1e-245) | protein kinase family protein (553 aa)
           
  0.412
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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