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Bra008322 protein (Brassica rapa) - STRING interaction network
"Bra008322" - AT1G77680 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008322AT1G77680 (E=0.0) | ribonuclease II family protein ; 3’-5’-exoribonuclease that specifically recognizes RNAs polyuridylated at their 3’ end and mediates their degradation. Component of an exosome-independent RNA degradation pathway that mediates degradation of cytoplasmic mRNAs that have been deadenylated and subsequently uridylated at their 3’ (1011 aa)    
Predicted Functional Partners:
Bra033392
AT1G03360 (E=1e-152) ATRRP4 | ATRRP4 (ARABIDOPSIS THALIANA RIBOSOMAL RNA PROCESSING 4); RNA binding / exonuclease (322 aa)
     
  0.984
Bra004139
AT5G38890 (E=1e-055) | exoribonuclease-related (137 aa)
       
  0.984
Bra040068
AT4G32175 (E=3e-116) | RNA binding (241 aa)
     
  0.982
Bra027816
AT1G60080 (E=1e-130) | 3’ exoribonuclease family domain 1-containing protein (301 aa)
     
  0.980
Bra018218
AT3G46210 (E=8e-060) | 3’ exoribonuclease family domain 1-containing protein (262 aa)
     
  0.980
Bra040025
AT3G07750 (E=6e-137) | 3’ exoribonuclease family domain 1-containing protein (288 aa)
     
  0.978
Bra029674
AT3G07750 (E=4e-144) | 3’ exoribonuclease family domain 1-containing protein (293 aa)
     
  0.978
Bra007620
AT3G61620 (E=3e-126) RRP41 | RRP41; 3’-5’-exoribonuclease/ RNA binding (240 aa)
     
  0.977
Bra003461
AT3G61620 (E=3e-065) RRP41 | RRP41; 3’-5’-exoribonuclease/ RNA binding (156 aa)
     
  0.977
Bra007540
AT3G60500 (E=1e-200) CER7, G3 | CER7 (ECERIFERUM 7); 3’-5’-exoribonuclease/ RNA binding (436 aa)
     
  0.977
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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