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Bra008323 protein (Brassica rapa) - STRING interaction network
"Bra008323" - AT1G18260 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008323AT1G18260 (E=1e-011) | suppressor of lin-12-like protein-related / sel-1 protein-related (434 aa)    
Predicted Functional Partners:
Bra005483
AT5G35080 (E=4e-128) | protein binding (280 aa)
     
  0.978
Bra006081
AT5G01960 (E=1e-191) | zinc finger (C3HC4-type RING finger) family protein (427 aa)
     
  0.908
Bra029520
AT4G04860 (E=2e-127) DER2.2 | DER2.2 (DERLIN-2.2) ; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins (244 aa)
       
  0.906
Bra020870
AT4G21810 (E=9e-127) DER2.1 | DER2.1 (DERLIN-2.1) ; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins (244 aa)
       
  0.906
Bra013563
AT4G21810 (E=5e-110) DER2.1 | DER2.1 (DERLIN-2.1) ; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins (284 aa)
       
  0.906
Bra011097
AT4G29330 (E=4e-109) DER1 | DER1 (DERLIN-1) ; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins (262 aa)
       
  0.906
Bra035284
AT4G12140 (E=6e-018) | zinc finger (C3HC4-type RING finger) family protein (93 aa)
     
  0.905
Bra029442
AT4G12190 (E=2e-022) | zinc finger (C3HC4-type RING finger) family protein (215 aa)
     
  0.905
Bra029441
AT4G12210 (E=4e-035) | zinc finger (C3HC4-type RING finger) family protein (222 aa)
     
  0.905
Bra023550
AT4G12210 (E=5e-019) | zinc finger (C3HC4-type RING finger) family protein (65 aa)
     
  0.905
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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