STRINGSTRING
Bra008325 protein (Brassica rapa) - STRING interaction network
"Bra008325" - AT1G77690 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008325AT1G77690 (E=5e-256) LAX3 | LAX3 (LIKE AUX1 3); amino acid transmembrane transporter/ auxin influx transmembrane transporter/ transporter (472 aa)    
Predicted Functional Partners:
Bra012358
AT1G23080 (E=3e-310) PIN7 | PIN7 (PIN-FORMED 7); auxin efflux transmembrane transporter/ auxin-hydrogen symporter/ transporter ; May act as a component of the auxin efflux carrier (603 aa)
           
  0.499
Bra029067
AT5G53460 (E=0.0) GLT1 | GLT1; glutamate synthase (NADH) (2199 aa)
           
  0.485
Bra035648
AT5G57090 (E=2e-269) EIR1, WAV6, ATPIN2, PIN2, AGR, AGR1 | EIR1 (ETHYLENE INSENSITIVE ROOT 1); auxin efflux transmembrane transporter/ auxin-hydrogen symporter/ transporter ; May act as a component of the auxin efflux carrier (661 aa)
           
  0.478
Bra006834
AT5G57090 (E=2e-314) EIR1, WAV6, ATPIN2, PIN2, AGR, AGR1 | EIR1 (ETHYLENE INSENSITIVE ROOT 1); auxin efflux transmembrane transporter/ auxin-hydrogen symporter/ transporter ; May act as a component of the auxin efflux carrier (642 aa)
           
  0.478
Bra039042
AT3G28860 (E=0.0) ATMDR1, ATMDR11, PGP19, MDR11, MDR1, ATPGP19, ABCB19, ATABCB19 | ABCB19; ATPase, coupled to transmembrane movement of substances / auxin efflux transmembrane transporter (1252 aa)
           
  0.453
Bra025359
AT3G28860 (E=0.0) ATMDR1, ATMDR11, PGP19, MDR11, MDR1, ATPGP19, ABCB19, ATABCB19 | ABCB19; ATPase, coupled to transmembrane movement of substances / auxin efflux transmembrane transporter (1252 aa)
           
  0.453
Bra007720
AT3G62980 (E=0.0) TIR1 | TIR1 (TRANSPORT INHIBITOR RESPONSE 1); auxin binding / protein binding / ubiquitin-protein ligase (595 aa)
       
 
  0.441
ARF7-2
AT1G19220 (E=2e-284) ARF19, IAA22, ARF11 | ARF19 (AUXIN RESPONSE FACTOR 19); DNA binding / transcription factor ; Auxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5’-TGTCTC-3’ found in the auxin-responsive promoter elements (AuxREs) (1100 aa)
           
  0.408
Bra002327
AT5G20730 (E=5e-264) NPH4, MSG1, IAA21, ARF7, TIR5, BIP | NPH4 (NON-PHOTOTROPHIC HYPOCOTYL); DNA binding / transcription activator/ transcription factor/ transcription regulator ; Auxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5’-TGTCTC-3’ found in the auxin-responsive promoter elements (AuxREs) (1439 aa)
           
  0.408
Bra040475
AT2G47000 (E=0.0) MDR4, PGP4, ABCB4, ATPGP4 | ABCB4 (ATP BINDING CASSETTE SUBFAMILY B4); ATPase, coupled to transmembrane movement of substances / xenobiotic-transporting ATPase (1287 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (12%) [HD]