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Bra008326 protein (Brassica rapa) - STRING interaction network
"Bra008326" - AT1G77700 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008326AT1G77700 (E=7e-117) | pathogenesis-related thaumatin family protein (304 aa)    
Predicted Functional Partners:
Bra031774
AT1G11650 (E=3e-157) ATRBP45B, RBP45B | RNA-binding protein 45 (RBP45), putative (394 aa)
           
  0.476
Bra008321
AT1G77660 (E=6e-141) | MORN (Membrane Occupation and Recognition Nexus) repeat-containing protein /phosphatidylinositol-4-phosphate 5-kinase-related (415 aa)
           
  0.449
Bra028272
AT5G51740 (E=7e-202) | peptidase M48 family protein (431 aa)
           
  0.408
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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