STRINGSTRING
Bra008329 protein (Brassica rapa) - STRING interaction network
"Bra008329" - AT1G77710 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008329AT1G77710 (E=1e-012) | INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 24 plant structures; EXPRESSED DURING- 15 growth stages; CONTAINS InterPro DOMAIN/s- Ubiquitin-like, Ufm1 (InterPro-IPR005375); Has 170 Blast hits to 170 proteins in 79 species- Archae - 0; Bacteria - 0; Metazoa - 105; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 38 (source- NCBI BLink). (73 aa)    
Predicted Functional Partners:
Bra010932
AT1G27530 (E=1e-100) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 15 growth stages; CONTAINS InterPro DOMAIN/s- Ubiquitin-conjugating enzyme/RWD-like (InterPro-IPR016135), Ubiquitin-fold modifier-conjugating enzyme 1 (InterPro-IPR014806); Has 183 Blast hits to 183 proteins in 80 species- Archae - 0; Bacteria - 0; Metazoa - 126; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 36 (source- NCBI BLink). ; E2-like enzyme which forms an intermediate wit [...] (174 aa)
     
 
  0.812
Bra010932.1-P
AT1G27530 (E=1e-100) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 15 growth stages; CONTAINS InterPro DOMAIN/s- Ubiquitin-conjugating enzyme/RWD-like (InterPro-IPR016135), Ubiquitin-fold modifier-conjugating enzyme 1 (InterPro-IPR014806); Has 183 Blast hits to 183 proteins in 80 species- Archae - 0; Bacteria - 0; Metazoa - 126; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 36 (source- NCBI BLink). (174 aa)
     
 
  0.812
Bra033420
AT5G03240 (E=8e-030) UBQ3 (71 aa)
       
 
  0.740
Bra028119
AT1G77550 (E=0.0) | protein binding / tubulin-tyrosine ligase (866 aa)
       
      0.737
Bra032136
AT4G30480 (E=1e-089) | tetratricopeptide repeat (TPR)-containing protein (277 aa)
       
      0.619
Bra011197
AT4G30480 (E=2e-026) | tetratricopeptide repeat (TPR)-containing protein (82 aa)
       
      0.619
Bra005986
AT5G08340 (E=5e-169) | riboflavin biosynthesis protein-related (367 aa)
       
      0.618
Bra038958
AT5G37340 (E=1e-124) | zinc finger (ZPR1-type) family protein (436 aa)
       
      0.616
Bra006628
AT5G37340 (E=6e-258) | zinc finger (ZPR1-type) family protein (504 aa)
       
      0.616
Bra002415
AT5G37340 (E=3e-145) | zinc finger (ZPR1-type) family protein (484 aa)
       
      0.616
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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