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Bra008332 protein (Brassica rapa) - STRING interaction network
"Bra008332" - AT1G77750 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008332AT1G77750 (E=9e-079) | 30S ribosomal protein S13, chloroplast, putative (154 aa)    
Predicted Functional Partners:
Bra040980
ATCG00780 (E=1e-038) RPL14 | encodes a chloroplast ribosomal protein L14, a constituent of the large subunit of the ribosomal complex (171 aa)
 
  0.999
Bra040978
ATCG00740 (E=1e-124) RPOA | RNA polymerase alpha subunit (475 aa)
   
  0.999
Bra021879
AT2G33800 (E=5e-078) | ribosomal protein S5 family protein (302 aa)
 
  0.999
Bra029928
AT5G23740 (E=1e-075) RPS11-BETA | RPS11-BETA (RIBOSOMAL PROTEIN S11-BETA); structural constituent of ribosome (159 aa)
   
  0.999
Bra029381
AT5G23740 (E=2e-077) RPS11-BETA | RPS11-BETA (RIBOSOMAL PROTEIN S11-BETA); structural constituent of ribosome (159 aa)
   
  0.999
Bra026484
AT5G23740 (E=7e-077) RPS11-BETA | RPS11-BETA (RIBOSOMAL PROTEIN S11-BETA); structural constituent of ribosome (159 aa)
   
  0.999
Bra018026
AT5G23740 (E=8e-067) RPS11-BETA | RPS11-BETA (RIBOSOMAL PROTEIN S11-BETA); structural constituent of ribosome (280 aa)
   
  0.999
Bra009706
AT5G23740 (E=2e-077) RPS11-BETA | RPS11-BETA (RIBOSOMAL PROTEIN S11-BETA); structural constituent of ribosome (159 aa)
   
  0.999
Bra039370
AT3G13120 (E=1e-059) | 30S ribosomal protein S10, chloroplast, putative (205 aa)
   
  0.999
Bra039347
AT3G13120 (E=3e-054) | 30S ribosomal protein S10, chloroplast, putative (103 aa)
   
  0.999
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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