STRINGSTRING
Bra008337 protein (Brassica rapa) - STRING interaction network
"Bra008337" - AT1G77800 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurence
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Experiments
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Textmining
[Homology]
Score
Bra008337AT1G77800 (E=0.0) | PHD finger family protein (1367 aa)    
Predicted Functional Partners:
Bra037784
AT5G64610 (E=3e-237) HAM1 | HAM1 (HISTONE ACETYLTRANSFERASE OF THE MYST FAMILY 1); H3/H4 histone acetyltransferase/ histone acetyltransferase/ nucleic acid binding / zinc ion binding (438 aa)
     
  0.821
Bra024313
AT5G64610 (E=4e-027) HAM1 | HAM1 (HISTONE ACETYLTRANSFERASE OF THE MYST FAMILY 1); H3/H4 histone acetyltransferase/ histone acetyltransferase/ nucleic acid binding / zinc ion binding (122 aa)
     
  0.821
Bra009399
AT5G09740 (E=3e-249) HAM2 | HAM2 (histone acetyltransferase of the MYST family 2); H3/H4 histone acetyltransferase/ histone acetyltransferase/ nucleic acid binding / zinc ion binding (442 aa)
     
  0.821
Bra033486
AT4G14385 (E=3e-017) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- vacuole; EXPRESSED IN- 24 plant structures; EXPRESSED DURING- 15 growth stages; CONTAINS InterPro DOMAIN/s- Histone H4 acetyltransferase, NuA4 complex, Eaf6 (InterPro-IPR015418); Has 245 Blast hits to 245 proteins in 100 species- Archae - 0; Bacteria - 0; Metazoa - 126; Fungi - 60; Plants - 29; Viruses - 0; Other Eukaryotes - 30 (source- NCBI BLink). (105 aa)
       
  0.763
Bra033293
AT1G01040 (E=0.0) DCL1, CAF, SUS1, SIN1, ASU1, EMB76, EMB60, ATDCL1 | DCL1 (DICER-LIKE 1); ATP-dependent helicase/ double-stranded RNA binding / protein binding / ribonuclease III (1846 aa)
     
 
  0.666
Bra031999
AT3G03300 (E=0.0) DCL2, ATDCL2 | DCL2 (DICER-LIKE 2); ATP binding / ATP-dependent helicase/ RNA binding / double-stranded RNA binding / helicase/ nucleic acid binding / ribonuclease III (1277 aa)
     
 
  0.666
Bra002293
AT5G20320 (E=0.0) DCL4, ATDCL4 | DCL4 (DICER-LIKE 4); RNA binding / protein binding / ribonuclease III (1641 aa)
     
 
  0.666
Bra030387
AT1G52380 (E=1e-141) | Ran-binding protein 1 domain-containing protein / RanBP1 domain-containing protein (428 aa)
     
      0.625
Bra018966
AT1G52380 (E=7e-110) | Ran-binding protein 1 domain-containing protein / RanBP1 domain-containing protein (397 aa)
     
      0.625
Bra040776
AT1G54390 (E=3e-133) ING2 | PHD finger protein-related (263 aa)
     
  0.598
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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