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Bra008342 protein (Brassica rapa) - STRING interaction network
"Bra008342" - AT1G78050 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008342AT1G78050 (E=7e-150) PGM | PGM (PHOSPHOGLYCERATE/BISPHOSPHOGLYCERATE MUTASE); catalytic/ intramolecular transferase, phosphotransferases (325 aa)    
Predicted Functional Partners:
Bra023072
AT2G36530 (E=9e-250) LOS2 | LOS2; copper ion binding / phosphopyruvate hydratase (444 aa)
   
  0.986
Bra018378
AT2G29560 (E=1e-259) | enolase, putative (475 aa)
   
  0.986
Bra015942
AT1G74030 (E=8e-263) | enolase, putative (478 aa)
   
  0.986
Bra031167
AT2G21170 (E=1e-150) TIM | TIM (TRIOSEPHOSPHATE ISOMERASE); catalytic/ triose-phosphate isomerase (320 aa)
   
  0.985
Bra030316
AT2G21170 (E=5e-137) TIM | TIM (TRIOSEPHOSPHATE ISOMERASE); catalytic/ triose-phosphate isomerase (312 aa)
   
  0.985
Bra014744
AT3G55440 (E=3e-126) ATCTIMC, TPI | TPI (TRIOSEPHOSPHATE ISOMERASE); triose-phosphate isomerase (254 aa)
   
  0.985
Bra014743
AT3G55440 (E=6e-127) ATCTIMC, TPI | TPI (TRIOSEPHOSPHATE ISOMERASE); triose-phosphate isomerase (254 aa)
   
  0.985
Bra039342
AT3G12780 (E=1e-227) PGK1 | PGK1 (PHOSPHOGLYCERATE KINASE 1); phosphoglycerate kinase (480 aa)
     
  0.982
Bra035124
AT1G79550 (E=1e-219) PGK | PGK (PHOSPHOGLYCERATE KINASE); phosphoglycerate kinase (401 aa)
     
  0.982
Bra008421
AT1G79550 (E=2e-220) PGK | PGK (PHOSPHOGLYCERATE KINASE); phosphoglycerate kinase (401 aa)
     
  0.982
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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