STRINGSTRING
Bra008343 protein (Brassica rapa) - STRING interaction network
"Bra008343" - AT1G78080 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008343AT1G78080 (E=7e-078) RAP2.4 | RAP2.4 (related to AP2 4); DNA binding / transcription factor (311 aa)    
Predicted Functional Partners:
Bra035511
AT1G32230 (E=1e-154) RCD1, CEO, CEO1, ATP8 | RCD1 (RADICAL-INDUCED CELL DEATH1); protein binding (558 aa)
       
      0.614
Bra023252
AT1G32230 (E=7e-211) RCD1, CEO, CEO1, ATP8 | RCD1 (RADICAL-INDUCED CELL DEATH1); protein binding (482 aa)
       
      0.614
Bra017053
AT2G39760 (E=1e-188) ATBPM3, BPM3 | BPM3; protein binding (399 aa)
       
      0.613
Bra006591
AT5G21010 (E=3e-210) ATBPM5 | ATBPM5 (BTB-POZ and MATH domain 5); protein binding (410 aa)
       
      0.613
Bra025920
AT1G18270 (E=0.0) | ketose-bisphosphate aldolase class-II family protein (1340 aa)
           
  0.489
Bra037394
AT4G00990 (E=7e-152) | transcription factor jumonji (jmjC) domain-containing protein (887 aa)
           
  0.426
Bra034494
AT1G62310 (E=7e-306) | transcription factor jumonji (jmjC) domain-containing protein (697 aa)
           
  0.426
Bra029664
AT3G07610 (E=1e-213) IBM1 | IBM1 (increase in bonsai methylation 1); histone demethylase(H3-K9 specific) / transcription factor (1080 aa)
           
  0.426
Bra027055
AT1G62310 (E=0.0) | transcription factor jumonji (jmjC) domain-containing protein (945 aa)
           
  0.426
Bra020547
AT5G26150 (E=7e-311) | protein kinase family protein (704 aa)
           
  0.426
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (5%) [HD]