STRINGSTRING
Bra008345 protein (Brassica rapa) - STRING interaction network
"Bra008345" - AT1G78100 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008345AT1G78100 (E=6e-127) | F-box family protein (317 aa)    
Predicted Functional Partners:
Bra033703
AT5G43890 (E=4e-212) YUC5, SUPER1 | YUCCA5; monooxygenase (426 aa)
       
      0.766
Bra032524
AT1G04180 (E=2e-226) | flavin-containing monooxygenase family protein / FMO family protein (422 aa)
       
      0.766
Bra015293
AT1G04180 (E=2e-213) | flavin-containing monooxygenase family protein / FMO family protein (420 aa)
       
      0.766
Bra011055
AT4G28720 (E=7e-233) | flavin-containing monooxygenase family protein / FMO family protein (426 aa)
       
      0.766
Bra010354
AT4G28720 (E=5e-229) | flavin-containing monooxygenase family protein / FMO family protein (426 aa)
       
      0.766
Bra007152
AT3G55340 (E=1e-114) PHIP1 | PHIP1 (PHRAGMOPLASTIN INTERACTING PROTEIN 1); RNA binding / mRNA binding (646 aa)
           
  0.441
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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