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Bra008348 protein (Brassica rapa) - STRING interaction network
"Bra008348" - AT1G78140 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008348AT1G78140 (E=6e-157) | methyltransferase-related (341 aa)    
Predicted Functional Partners:
Bra009806
AT5G24970 (E=2e-271) | ABC1 family protein (1081 aa)
   
 
  0.849
Bra005848
AT5G05200 (E=1e-152) | ABC1 family protein (535 aa)
   
 
  0.844
Bra009094
AT5G05200 (E=1e-216) | ABC1 family protein (517 aa)
   
 
  0.836
Bra003601
AT1G79600 (E=0.0) | ABC1 family protein (1154 aa)
   
 
  0.813
Bra016114
AT1G71810 (E=3e-108) | ABC1 family protein (612 aa)
   
 
  0.812
Bra020472
AT5G24810 (E=0.0) | ABC1 family protein (999 aa)
   
 
  0.803
Bra009794
AT5G24810 (E=0.0) | ABC1 family protein (1032 aa)
   
 
  0.803
Bra038340
AT1G68890 (E=0.0) | 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding (1710 aa)
   
   
  0.785
Bra029670
AT3G07700 (E=0.0) | ABC1 family protein (700 aa)
   
 
  0.768
Bra040863
AT5G50330 (E=1e-243) | ATP binding / protein kinase (485 aa)
   
 
  0.752
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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