STRINGSTRING
Bra008349 protein (Brassica rapa) - STRING interaction network
"Bra008349" - AT1G78150 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008349AT1G78150 (E=6e-123) | unknown protein (280 aa)    
Predicted Functional Partners:
Bra010730
AT4G38710 (E=8e-096) | glycine-rich protein (405 aa)
           
  0.545
Bra001399
AT3G11330 (E=5e-199) | leucine-rich repeat family protein (498 aa)
           
  0.544
Bra000544
AT2G26530 (E=1e-070) AR781 | AR781 (304 aa)
           
  0.504
Bra026902
AT1G13470 (E=1e-172) | unknown protein (380 aa)
           
  0.483
Bra026901
AT1G13520 (E=2e-159) | unknown protein (380 aa)
           
  0.483
Bra019719
AT1G13530 (E=3e-181) | unknown protein (381 aa)
           
  0.483
Bra016728
AT1G13520 (E=4e-183) | unknown protein (386 aa)
           
  0.483
Bra016727
AT1G13540 (E=4e-169) | unknown protein (388 aa)
           
  0.483
Bra034849
AT3G11330 (E=8e-181) | leucine-rich repeat family protein (497 aa)
           
  0.459
Bra009140
AT5G05850 (E=5e-229) | leucine-rich repeat family protein (504 aa)
           
  0.459
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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