STRINGSTRING
Bra008356 protein (Brassica rapa) - STRING interaction network
"Bra008356" - AT1G78310 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008356AT1G78310 (E=1e-050) | VQ motif-containing protein (289 aa)    
Predicted Functional Partners:
Bra022033
AT5G46350 (E=5e-103) WRKY8, ATWRKY8 | WRKY8; transcription factor (317 aa)
       
 
  0.802
Bra040926
AT4G18170 (E=4e-119) WRKY28, ATWRKY28 | WRKY28; transcription factor (294 aa)
       
 
  0.761
Bra010608
AT4G37710 (E=4e-038) | VQ motif-containing protein (114 aa)
       
 
  0.565
Bra039937
AT2G22880 (E=7e-024) | VQ motif-containing protein (138 aa)
       
 
  0.451
Bra035182
AT1G80450 (E=7e-047) | VQ motif-containing protein (167 aa)
           
  0.448
Bra008473
AT1G80450 (E=5e-067) | VQ motif-containing protein (164 aa)
           
  0.448
Bra007373
AT3G58000 (E=4e-057) | VQ motif-containing protein (181 aa)
           
  0.448
Bra003566
AT1G80450 (E=7e-063) | VQ motif-containing protein (173 aa)
           
  0.448
Bra027262
AT3G15300 (E=1e-082) | VQ motif-containing protein (225 aa)
           
  0.447
Bra021096
AT3G15300 (E=4e-075) | VQ motif-containing protein (216 aa)
           
  0.447
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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