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Bra008360 protein (Brassica rapa) - STRING interaction network
"Bra008360" - AT1G78420 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008360AT1G78420 (E=3e-117) | protein binding / zinc ion binding (375 aa)    
Predicted Functional Partners:
Bra006916
AT1G75510 (E=2e-049) | transcription initiation factor IIF beta subunit (TFIIF-beta) family protein (396 aa)
     
      0.836
Bra025767
AT1G75510 (E=2e-024) | transcription initiation factor IIF beta subunit (TFIIF-beta) family protein (269 aa)
       
      0.836
Bra012813
AT3G52270 (E=5e-070) | ATP binding / RNA polymerase II transcription factor (257 aa)
       
      0.836
Bra008202
AT1G75510 (E=4e-102) | transcription initiation factor IIF beta subunit (TFIIF-beta) family protein (260 aa)
       
      0.836
Bra003750
AT1G75510 (E=4e-101) | transcription initiation factor IIF beta subunit (TFIIF-beta) family protein (269 aa)
       
      0.836
Bra037089
AT3G52560 (E=1e-059) UEV1D-4, MMZ4, UEV1D | UEV1D-4 (UBIQUITIN E2 VARIANT 1D-4); protein binding / ubiquitin-protein ligase (184 aa)
       
      0.750
Bra033422
AT3G52560 (E=7e-078) UEV1D-4, MMZ4, UEV1D | UEV1D-4 (UBIQUITIN E2 VARIANT 1D-4); protein binding / ubiquitin-protein ligase (146 aa)
       
      0.750
Bra024574
AT1G23260 (E=3e-084) MMZ1, UEV1A | MMZ1 (MMS ZWEI HOMOLOGUE 1); protein binding / ubiquitin-protein ligase (158 aa)
       
      0.750
Bra016355
AT1G23260 (E=4e-085) MMZ1, UEV1A | MMZ1 (MMS ZWEI HOMOLOGUE 1); protein binding / ubiquitin-protein ligase (158 aa)
       
      0.750
Bra007932
AT1G70660 (E=5e-080) MMZ2, UEV1B | MMZ2 (MMS ZWEI HOMOLOGE 2); protein binding / ubiquitin-protein ligase (159 aa)
       
      0.750
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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