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Bra008362 protein (Brassica rapa) - STRING interaction network
"Bra008362" - AT1G78440 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008362AT1G78440 (E=2e-143) ATGA2OX1 | ATGA2OX1 (gibberellin 2-oxidase 1); gibberellin 2-beta-dioxygenase (320 aa)    
Predicted Functional Partners:
Bra013890
AT4G25420 (E=1e-187) GA5, GA20OX1, AT2301, ATGA20OX1 | GA20OX1; gibberellin 20-oxidase (376 aa)
   
   
0.919
Bra022565
AT5G51810 (E=7e-203) GA20OX2, AT2353, ATGA20OX2 | GA20OX2 (GIBBERELLIN 20 OXIDASE 2); gibberellin 20-oxidase (377 aa)
   
   
0.917
Bra026122
AT1G15550 (E=5e-182) GA4, ATGA3OX1, GA3OX1 | GA3OX1 (GIBBERELLIN 3-OXIDASE 1); gibberellin 3-beta-dioxygenase/ transcription factor binding (359 aa)
   
   
0.917
Bra028277
AT5G51810 (E=6e-181) GA20OX2, AT2353, ATGA20OX2 | GA20OX2 (GIBBERELLIN 20 OXIDASE 2); gibberellin 20-oxidase (380 aa)
   
   
0.916
Bra026757
AT1G15550 (E=4e-188) GA4, ATGA3OX1, GA3OX1 | GA3OX1 (GIBBERELLIN 3-OXIDASE 1); gibberellin 3-beta-dioxygenase/ transcription factor binding (358 aa)
   
   
0.915
Bra019165
AT4G25420 (E=1e-175) GA5, GA20OX1, AT2301, ATGA20OX1 | GA20OX1; gibberellin 20-oxidase (350 aa)
   
   
0.915
Bra008480
AT1G80340 (E=7e-186) GA4H, ATGA3OX2, GA3OX2 | GA3OX2 (GIBBERELLIN 3-OXIDASE 2); gibberellin 3-beta-dioxygenase (358 aa)
   
   
0.915
Bra009868
AT5G25900 (E=5e-234) GA3, CYP701A3, ATKO1 | GA3 (GA REQUIRING 3); ent-kaurene oxidase/ oxygen binding (503 aa)
       
  0.699
Bra035120
AT1G79460 (E=0.0) GA2, KS, ATKS | GA2 (GA REQUIRING 2); ent-kaurene synthase (780 aa)
           
  0.541
Bra002944
AT5G54940 (E=9e-055) | eukaryotic translation initiation factor SUI1, putative (232 aa)
              0.520
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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