STRINGSTRING
Bra008371 protein (Brassica rapa) - STRING interaction network
"Bra008371" - AT1G78600 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008371AT1G78600 (E=2e-121) LZF1, STH3 | LZF1 (LIGHT-REGULATED ZINC FINGER PROTEIN 1); transcription factor/ zinc ion binding (291 aa)    
Predicted Functional Partners:
Bra008976
AT5G11260 (E=6e-048) HY5, TED 5 | HY5 (ELONGATED HYPOCOTYL 5); DNA binding / double-stranded DNA binding / transcription factor (164 aa)
       
 
  0.745
Bra001671
AT3G17609 (E=1e-058) HYH | HYH (HY5-HOMOLOG); DNA binding / transcription factor (150 aa)
       
 
  0.684
Bra005541
AT2G32950 (E=0.0) COP1, ATCOP1, DET340, FUS1, EMB168 | COP1 (CONSTITUTIVE PHOTOMORPHOGENIC 1); protein binding / ubiquitin-protein ligase (669 aa)
       
 
  0.587
Bra032849
AT1G27760 (E=5e-207) SAT32, ATSAT32 | interferon-related developmental regulator family protein / IFRD protein family (442 aa)
           
  0.532
Bra010918
AT1G27760 (E=6e-177) SAT32, ATSAT32 | interferon-related developmental regulator family protein / IFRD protein family (421 aa)
           
  0.532
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (10%) [HD]