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Bra008372 protein (Brassica rapa) - STRING interaction network
"Bra008372" - AT1G78610 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008372AT1G78610 (E=2e-041) MSL6 | MSL6 (MECHANOSENSITIVE CHANNEL OF SMALL CONDUCTANCE-LIKE 6) (205 aa)    
Predicted Functional Partners:
Bra015924
AT1G74260 (E=0.0) PUR4 | PUR4 (purine biosynthesis 4); ATP binding / catalytic/ phosphoribosylformylglycinamidine synthase (1516 aa)
              0.537
Bra003809
AT1G74260 (E=0.0) PUR4 | PUR4 (purine biosynthesis 4); ATP binding / catalytic/ phosphoribosylformylglycinamidine synthase (1380 aa)
              0.537
Bra041099
Uncharacterized protein (698 aa)
              0.535
Bra027795
AT1G63660 (E=6e-286) | GMP synthase (glutamine-hydrolyzing), putative / glutamine amidotransferase, putative (530 aa)
         
  0.507
Bra000908
AT4G01900 (E=1e-084) PII, GLB1 | GLB1 (GLNB1 HOMOLOG); acetylglutamate kinase regulator (196 aa)
       
      0.506
Bra027179
AT3G16260 (E=0.0) TRZ4 | TRZ4 (TRNASE Z 4); 3’-tRNA processing endoribonuclease/ catalytic (925 aa)
         
  0.441
Bra018950
AT1G52160 (E=0.0) TRZ3 | TRZ3 (TRNASE Z 3); 3’-tRNA processing endoribonuclease/ catalytic (813 aa)
         
  0.441
Bra013203
AT2G04530 (E=1e-165) CPZ, TRZ2 | CPZ; 3’-tRNA processing endoribonuclease (352 aa)
         
  0.441
Bra014799
AT3G54690 (E=9e-167) | sugar isomerase (SIS) domain-containing protein / CBS domain-containing protein (338 aa)
         
  0.439
Bra003192
AT3G54690 (E=2e-174) | sugar isomerase (SIS) domain-containing protein / CBS domain-containing protein (347 aa)
         
  0.439
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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