STRINGSTRING
Bra008389 protein (Brassica rapa) - STRING interaction network
"Bra008389" - AT1G79000 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008389AT1G79000 (E=0.0) HAC1, PCAT2, ATHPCAT2 | HAC1 (HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 1); H3/H4 histone acetyltransferase/ histone acetyltransferase/ transcription cofactor (1583 aa)    
Predicted Functional Partners:
Bra002571
AT3G46520 (E=1e-217) ACT12 | ACT12 (ACTIN-12); structural constituent of cytoskeleton (605 aa)
       
  0.924
Bra014803
AT3G54610 (E=8e-206) HAT1, GCN5, HAG1, HAC3, HAG01, BGT | GCN5; DNA binding / H3 histone acetyltransferase/ histone acetyltransferase (548 aa)
       
  0.758
Bra014800
AT3G54610 (E=6e-182) HAT1, GCN5, HAG1, HAC3, HAG01, BGT | GCN5; DNA binding / H3 histone acetyltransferase/ histone acetyltransferase (525 aa)
       
  0.758
Bra007082
AT3G54610 (E=3e-073) HAT1, GCN5, HAG1, HAC3, HAG01, BGT | GCN5; DNA binding / H3 histone acetyltransferase/ histone acetyltransferase (258 aa)
       
  0.758
Bra039210
AT2G23740 (E=5e-041) | nucleic acid binding / transcription factor/ zinc ion binding (306 aa)
       
  0.752
Bra032148
AT2G23740 (E=0.0) | nucleic acid binding / transcription factor/ zinc ion binding (1366 aa)
       
  0.752
HD1
AT4G38130 (E=8e-284) HD1, HDA19, ATHD1, HDA1, RPD3A | HD1 (HISTONE DEACETYLASE 1); basal transcription repressor/ histone deacetylase/ protein binding (502 aa)
     
  0.744
Bra038607
AT5G63110 (E=5e-261) HDA6, AXE1, ATHDA6, RTS1, RPD3B, SIL1 | HDA6 (HISTONE DEACETYLASE 6); histone deacetylase (570 aa)
     
  0.744
Bra035858
AT5G63110 (E=7e-251) HDA6, AXE1, ATHDA6, RTS1, RPD3B, SIL1 | HDA6 (HISTONE DEACETYLASE 6); histone deacetylase (470 aa)
     
  0.744
Bra019516
AT5G35600 (E=2e-137) HDA7 | HDA7 (histone deacetylase7); histone deacetylase (401 aa)
     
  0.744
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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