STRINGSTRING
Bra008401 protein (Brassica rapa) - STRING interaction network
"Bra008401" - AT1G79190 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008401AT1G79190 (E=0.0) | binding (1316 aa)    
Predicted Functional Partners:
Bra019546
AT3G48470 (E=0.0) EMB2423 | EMB2423 (EMBRYO DEFECTIVE 2423) (1003 aa)
       
  0.988
Bra039647
AT1G50030 (E=0.0) TOR | TOR (TARGET OF RAPAMYCIN); 1-phosphatidylinositol-3-kinase/ protein binding (2452 aa)
     
  0.959
Bra018828
AT1G50030 (E=0.0) TOR | TOR (TARGET OF RAPAMYCIN); 1-phosphatidylinositol-3-kinase/ protein binding (2435 aa)
     
  0.959
Bra015251
AT5G40820 (E=8e-032) ATRAD3, ATR, ATATR | ATRAD3; binding / inositol or phosphatidylinositol kinase/ phosphotransferase, alcohol group as acceptor / protein serine/threonine kinase (3604 aa)
     
  0.959
Bra014234
AT1G50030 (E=1e-026) TOR | TOR (TARGET OF RAPAMYCIN); 1-phosphatidylinositol-3-kinase/ protein binding (79 aa)
     
  0.959
Bra024486
AT4G36080 (E=0.0) | FAT domain-containing protein / phosphatidylinositol 3- and 4-kinase family protein (3858 aa)
     
  0.957
Bra037246
AT4G36080 (E=0.0) | FAT domain-containing protein / phosphatidylinositol 3- and 4-kinase family protein (3775 aa)
     
  0.957
Bra011659
AT4G36080 (E=0.0) | FAT domain-containing protein / phosphatidylinositol 3- and 4-kinase family protein (3756 aa)
     
  0.957
Bra037834
AT5G67630 (E=8e-034) | DNA helicase, putative (93 aa)
       
 
  0.951
Bra024433
AT5G67630 (E=8e-236) | DNA helicase, putative (466 aa)
       
 
  0.951
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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