STRINGSTRING
Bra008405 protein (Brassica rapa) - STRING interaction network
"Bra008405" - AT1G79260 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008405AT1G79260 (E=8e-078) | unknown protein (158 aa)    
Predicted Functional Partners:
Bra003497
AT3G62370 (E=8e-198) | unknown protein (361 aa)
           
  0.541
Bra027514
AT5G43920 (E=1e-254) | transducin family protein / WD-40 repeat family protein (1112 aa)
           
  0.479
Bra004555
AT2G46225 (E=2e-134) ABIL1 | ABIL1 (Abi-1-like 1) (303 aa)
           
  0.450
Bra039625
AT2G18240 (E=1e-066) | RER1 protein, putative (209 aa)
           
  0.420
Bra031203
AT2G21600 (E=2e-077) ATRER1B | ATRER1B (191 aa)
           
  0.420
Bra030290
AT2G21600 (E=2e-089) ATRER1B | ATRER1B (200 aa)
           
  0.420
Bra010695
AT4G39220 (E=1e-091) ATRER1A | ATRER1A (191 aa)
           
  0.420
Bra025802
AT1G20225 (E=2e-112) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- vacuole; CONTAINS InterPro DOMAIN/s- Thioredoxin-like fold (InterPro-IPR012336); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT1G76020.1); Has 156 Blast hits to 152 proteins in 51 species- Archae - 0; Bacteria - 81; Metazoa - 14; Fungi - 6; Plants - 28; Viruses - 0; Other Eukaryotes - 27 (source- NCBI BLink). (233 aa)
           
  0.418
Bra025801
AT1G76010 (E=6e-069) | nucleic acid binding (334 aa)
           
  0.418
Bra016472
AT1G76010 (E=6e-061) | nucleic acid binding (645 aa)
           
  0.418
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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