STRINGSTRING
Bra008411 protein (Brassica rapa) - STRING interaction network
"Bra008411" - AT1G79430 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008411AT1G79430 (E=9e-178) APL, WDY | APL (ALTERED PHLOEM DEVELOPMENT); transcription factor/ transcription regulator (346 aa)    
Predicted Functional Partners:
Bra029305
AT5G61850 (E=3e-171) LFY, LFY3 | LFY (LEAFY); chromatin DNA binding / sequence-specific DNA binding / transcription factor (415 aa)
           
  0.497
Bra019619
AT5G61850 (E=8e-168) LFY, LFY3 | LFY (LEAFY); chromatin DNA binding / sequence-specific DNA binding / transcription factor (413 aa)
           
  0.497
Bra018311
AT2G30490 (E=3e-256) ATC4H, C4H, CYP73A5 | C4H (CINNAMATE-4-HYDROXYLASE); trans-cinnamate 4-monooxygenase (505 aa)
           
  0.483
Bra033442
AT3G52300 (E=1e-089) ATPQ | ATPQ (ATP SYNTHASE D CHAIN, MITOCHONDRIAL); hydrogen ion transmembrane transporter (168 aa)
           
  0.472
Bra012809
AT3G52300 (E=5e-081) ATPQ | ATPQ (ATP SYNTHASE D CHAIN, MITOCHONDRIAL); hydrogen ion transmembrane transporter (168 aa)
           
  0.472
Bra006918
AT3G52300 (E=2e-080) ATPQ | ATPQ (ATP SYNTHASE D CHAIN, MITOCHONDRIAL); hydrogen ion transmembrane transporter (168 aa)
           
  0.472
Bra023288
AT1G32770 (E=6e-169) ANAC012, SND1, NST3 | ANAC012 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 12); specific transcriptional repressor/ transcription activator/ transcription factor (364 aa)
           
  0.465
Bra017809
AT4G36920 (E=4e-204) AP2, FLO2, FL1 | AP2 (APETALA 2); transcription factor (432 aa)
           
  0.441
Bra011741
AT4G36920 (E=4e-204) AP2, FLO2, FL1 | AP2 (APETALA 2); transcription factor (433 aa)
           
  0.441
Bra040486
AT2G46770 (E=6e-177) NST1, EMB2301, ANAC043 | EMB2301 (EMBRYO DEFECTIVE 2301); transcription activator/ transcription factor (364 aa)
           
  0.410
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (9%) [HD]