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Bra008413 protein (Brassica rapa) - STRING interaction network
"Bra008413" - AT1G20960 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008413AT1G20960 (E=0.0) emb1507 | emb1507 (embryo defective 1507); ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding / nucleoside-triphosphatase/ nucleotide binding (936 aa)    
Predicted Functional Partners:
Bra003512
AT2G47610 (E=2e-108) | 60S ribosomal protein L7A (RPL7aA) (405 aa)
     
  0.993
Bra029460
AT1G80070 (E=2e-013) SUS2, EMB33, EMB177, EMB14 | SUS2 (ABNORMAL SUSPENSOR 2) (87 aa)
     
  0.982
Bra021701
AT1G80070 (E=0.0) SUS2, EMB33, EMB177, EMB14 | SUS2 (ABNORMAL SUSPENSOR 2) (2338 aa)
     
  0.982
Bra013431
AT1G80070 (E=0.0) SUS2, EMB33, EMB177, EMB14 | SUS2 (ABNORMAL SUSPENSOR 2) (2369 aa)
     
  0.982
Bra005076
AT1G80070 (E=0.0) SUS2, EMB33, EMB177, EMB14 | SUS2 (ABNORMAL SUSPENSOR 2) (2289 aa)
     
  0.982
Bra005075
AT1G80070 (E=8e-114) SUS2, EMB33, EMB177, EMB14 | SUS2 (ABNORMAL SUSPENSOR 2) (267 aa)
     
  0.982
Bra003548
AT1G80070 (E=1e-012) SUS2, EMB33, EMB177, EMB14 | SUS2 (ABNORMAL SUSPENSOR 2) (53 aa)
     
  0.982
Bra040091
AT3G26560 (E=5e-178) | ATP-dependent RNA helicase, putative (791 aa)
     
  0.970
Bra025211
AT3G26560 (E=0.0) | ATP-dependent RNA helicase, putative (1171 aa)
     
  0.970
Bra034571
AT4G03430 (E=4e-285) STA1, EMB2770 | EMB2770 (EMBRYO DEFECTIVE 2770); RNA splicing factor, transesterification mechanism (962 aa)
     
  0.963
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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