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Bra008415 protein (Brassica rapa) - STRING interaction network
"Bra008415" - AT1G79500 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008415AT1G79500 (E=3e-130) AtkdsA1 | 2-dehydro-3-deoxyphosphooctonate aldolase / phospho-2-dehydro-3-deoxyoctonate aldolase / 3-deoxy-D-manno-octulosonic acid 8-phosphate synthetase (KDSA) (252 aa)    
Predicted Functional Partners:
Bra014799
AT3G54690 (E=9e-167) | sugar isomerase (SIS) domain-containing protein / CBS domain-containing protein (338 aa)
 
 
  0.984
Bra003192
AT3G54690 (E=2e-174) | sugar isomerase (SIS) domain-containing protein / CBS domain-containing protein (347 aa)
 
 
  0.984
Bra040813
AT1G53000 (E=5e-146) | cytidylyltransferase family (290 aa)
 
 
 
  0.789
Bra030966
AT1G53000 (E=1e-139) | cytidylyltransferase family (289 aa)
 
 
 
  0.789
Bra010323
AT4G29540 (E=4e-143) | bacterial transferase hexapeptide repeat-containing protein (335 aa)
 
     
  0.772
Bra010979
AT1G25054 (E=2e-142) | UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase (323 aa)
 
     
  0.772
Bra029566
AT4G21220 (E=4e-118) | bacterial transferase hexapeptide repeat-containing protein (297 aa)
 
     
  0.770
Bra009511
AT5G03770 (E=3e-211) | 3-deoxy-D-manno-octulosonic acid transferase-related (453 aa)
 
     
  0.769
Bra015155
AT2G04560 (E=6e-139) | transferase, transferring glycosyl groups (488 aa)
 
     
  0.762
Bra029134
AT5G52190 (E=5e-080) | sugar isomerase (SIS) domain-containing protein (196 aa)
       
  0.658
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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