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Bra008425 protein (Brassica rapa) - STRING interaction network
"Bra008425" - AT1G79590 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008425AT1G79590 (E=3e-119) SYP52, ATSYP52 | SYP52 (SYNTAXIN OF PLANTS 52); SNAP receptor (234 aa)    
Predicted Functional Partners:
Bra040987
AT5G39510 (E=2e-094) VTI11, ATVTI1A, ATVTI11, ZIG, SGR4, VTI1A | SGR4 (SHOOT GRAVITROPSIM 4); receptor (221 aa)
     
  0.994
Bra036218
AT5G39510 (E=5e-097) VTI11, ATVTI1A, ATVTI11, ZIG, SGR4, VTI1A | SGR4 (SHOOT GRAVITROPSIM 4); receptor (221 aa)
     
  0.994
Bra012446
AT1G26670 (E=2e-099) VTI12, ATVTI12, VTI1B | VTI1B; SNARE binding / receptor/ soluble NSF attachment protein (222 aa)
     
  0.994
Bra020394
AT5G58060 (E=2e-106) YKT61, ATYKT61, ATGP1 | YKT61 (199 aa)
     
  0.994
Bra002675
AT5G58060 (E=8e-107) YKT61, ATYKT61, ATGP1 | YKT61 (199 aa)
     
  0.994
Bra040178
AT4G17730 (E=9e-095) SYP23, ATSYP23 | SYP23 (SYNTAXIN OF PLANTS 23); SNAP receptor (276 aa)
     
  0.994
Bra024989
AT5G46860 (E=7e-116) VAM3, ATVAM3, SYP22, ATSYP22, SGR3 | VAM3; SNAP receptor (270 aa)
     
  0.994
Bra022073
AT5G46860 (E=3e-124) VAM3, ATVAM3, SYP22, ATSYP22, SGR3 | VAM3; SNAP receptor (267 aa)
     
  0.994
Bra028434
AT5G39500 (E=0.0) | pattern formation protein, putative (1675 aa)
     
  0.978
Bra012645
AT4G17730 (E=4e-100) SYP23, ATSYP23 | SYP23 (SYNTAXIN OF PLANTS 23); SNAP receptor (278 aa)
     
  0.978
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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