STRINGSTRING
Bra008448 protein (Brassica rapa) - STRING interaction network
"Bra008448" - AT1G80650 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008448AT1G80650 (E=3e-046) RTL1 | RTL1 (RNase three-like protein 1); RNA binding / double-stranded RNA binding (202 aa)    
Predicted Functional Partners:
Bra036299
AT4G02030 (E=2e-163) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Vps51/Vps67 (InterPro-IPR014812); BEST Arabidopsis thaliana protein match is- SEC5B (TAIR-AT1G21170.1); Has 386 Blast hits to 358 proteins in 130 species- Archae - 0; Bacteria - 5; Metazoa - 171; Fungi - 64; Plants - 54; Viruses - 4; Other Eukaryotes - 88 (source- NCBI BLink). (761 aa)
           
  0.483
Bra029488
AT4G04330 (E=1e-078) | unknown protein (174 aa)
           
  0.431
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (6%) [HD]