STRINGSTRING
Bra008455.1-P protein (Brassica rapa) - STRING interaction network
"Bra008455.1-P" - AT3G21300 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008455.1-PAT3G21300 (E=7e-061) | RNA methyltransferase family protein (125 aa)    
Predicted Functional Partners:
Bra039889
AT5G15550 (E=1e-024) | transducin family protein / WD-40 repeat family protein (120 aa)
     
        0.839
Bra023524
AT5G15550 (E=4e-208) | transducin family protein / WD-40 repeat family protein ; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit (428 aa)
     
        0.839
Bra008691
AT5G15550 (E=7e-209) | transducin family protein / WD-40 repeat family protein ; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit (428 aa)
     
        0.839
Bra006306
AT5G15550 (E=2e-204) | transducin family protein / WD-40 repeat family protein ; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit (428 aa)
     
        0.839
Bra036641
AT3G16810 (E=3e-022) APUM24 | APUM24 (Arabidopsis Pumilio 24); RNA binding / binding (118 aa)
     
        0.829
Bra022180
AT3G16810 (E=1e-261) APUM24 | APUM24 (Arabidopsis Pumilio 24); RNA binding / binding (643 aa)
     
        0.829
Bra039376
AT3G13180 (E=2e-269) | NOL1/NOP2/sun family protein / antitermination NusB domain-containing protein (523 aa)
     
  0.779
Bra035594
AT5G55920 (E=4e-205) OLI2 | nucleolar protein, putative (640 aa)
     
  0.779
Bra030658
AT1G06560 (E=3e-281) | NOL1/NOP2/sun family protein (555 aa)
     
  0.779
Bra026418
AT4G26600 (E=2e-213) | nucleolar protein, putative (641 aa)
     
  0.779
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (11%) [HD]