STRINGSTRING
Bra008462 protein (Brassica rapa) - STRING interaction network
"Bra008462" - AT2G26000 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008462AT2G26000 (E=4e-239) | zinc finger (C3HC4-type RING finger) family protein (502 aa)    
Predicted Functional Partners:
Bra038613
AT2G42160 (E=4e-221) | zinc finger (ubiquitin-hydrolase) domain-containing protein (488 aa)
       
 
0.886
Bra027730
AT1G64460 (E=3e-149) | phosphatidylinositol 3- and 4-kinase family protein (533 aa)
     
    0.599
Bra027702
AT1G64460 (E=3e-155) | phosphatidylinositol 3- and 4-kinase family protein (498 aa)
     
    0.599
Bra026464
AT5G24240 (E=6e-180) | phosphatidylinositol 3- and 4-kinase family protein / ubiquitin family protein (466 aa)
     
    0.599
Bra006947
AT5G24240 (E=2e-277) | phosphatidylinositol 3- and 4-kinase family protein / ubiquitin family protein (574 aa)
     
    0.599
Bra012402
AT5G24240 (E=9e-242) | phosphatidylinositol 3- and 4-kinase family protein / ubiquitin family protein (1162 aa)
     
    0.599
Bra009742
AT5G24240 (E=1e-274) | phosphatidylinositol 3- and 4-kinase family protein / ubiquitin family protein (574 aa)
     
    0.599
Bra006947.1-P
AT5G24240 (E=2e-277) | phosphatidylinositol 3- and 4-kinase family protein / ubiquitin family protein (574 aa)
     
    0.599
Bra037195
AT5G65930 (E=0.0) ZWI, PKCBP, KCBP | ZWI (ZWICHEL); calmodulin binding / microtubule motor (1264 aa)
     
 
  0.586
Bra031801
AT5G65930 (E=0.0) ZWI, PKCBP, KCBP | ZWI (ZWICHEL); calmodulin binding / microtubule motor (1281 aa)
     
 
  0.586
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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