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Bra008469 protein (Brassica rapa) - STRING interaction network
"Bra008469" - AT1G80510 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008469AT1G80510 (E=4e-204) | amino acid transporter family protein (482 aa)    
Predicted Functional Partners:
Bra033783
AT3G47940 (E=4e-152) | DNAJ heat shock protein, putative (325 aa)
         
  0.562
Bra027838
AT1G59725 (E=6e-150) | DNAJ heat shock protein, putative (340 aa)
         
  0.562
Bra019519
AT3G47940 (E=7e-148) | DNAJ heat shock protein, putative (332 aa)
         
  0.562
Bra018443
AT1G10350 (E=9e-143) | DNAJ heat shock protein, putative (349 aa)
         
  0.562
Bra018099
AT3G47940 (E=3e-139) | DNAJ heat shock protein, putative (334 aa)
         
  0.562
Bra026113
AT1G15740 (E=1e-260) | leucine-rich repeat family protein (578 aa)
           
  0.541
Bra040786
AT4G38360 (E=5e-075) | unknown protein (357 aa)
     
 
  0.524
Bra035172
AT1G80530 (E=1e-264) | nodulin family protein (559 aa)
           
  0.522
Bra003572
AT1G80530 (E=9e-263) | nodulin family protein (557 aa)
           
  0.522
Bra033558
AT4G38250 (E=2e-158) | amino acid transporter family protein (358 aa)
     
 
  0.513
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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