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Bra008470 protein (Brassica rapa) - STRING interaction network
"Bra008470" - AT1G80480 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008470AT1G80480 (E=2e-177) PTAC17 | PTAC17 (PLASTID TRANSCRIPTIONALLY ACTIVE17) (455 aa)    
Predicted Functional Partners:
Bra026916
AT1G13270 (E=5e-177) MAP1C, MAP1B | MAP1C (METHIONINE AMINOPEPTIDASE 1B); aminopeptidase/ metalloexopeptidase (368 aa)
     
 
  0.915
Bra011733
AT4G37040 (E=3e-186) MAP1D | MAP1D (METHIONINE AMINOPEPTIDASE 1D); aminopeptidase/ metalloexopeptidase (351 aa)
     
 
  0.908
Bra025159
AT3G25740 (E=6e-152) MAP1B, MAP1C | MAP1B (METHIONINE AMINOPEPTIDASE 1C); aminopeptidase/ metalloexopeptidase (829 aa)
     
 
  0.904
Bra010585
AT4G37040 (E=4e-071) MAP1D | MAP1D (METHIONINE AMINOPEPTIDASE 1D); aminopeptidase/ metalloexopeptidase (211 aa)
     
 
  0.904
Bra004893
AT2G45240 (E=6e-227) MAP1A | MAP1A (METHIONINE AMINOPEPTIDASE 1A); aminopeptidase/ metalloexopeptidase (403 aa)
     
 
  0.904
Bra035563
AT5G55220 (E=9e-245) | trigger factor type chaperone family protein (545 aa)
     
      0.635
Bra006878
AT3G51800 (E=2e-173) ATG2 | ATG2; aminopeptidase/ metalloexopeptidase (796 aa)
     
 
  0.635
Bra014520
AT3G59990 (E=7e-208) MAP2B | MAP2B (METHIONINE AMINOPEPTIDASE 2B); aminopeptidase/ metalloexopeptidase ; Cotranslationally removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val) (448 aa)
     
 
  0.632
Bra008284
AT3G59990 (E=4e-038) MAP2B | MAP2B (METHIONINE AMINOPEPTIDASE 2B); aminopeptidase/ metalloexopeptidase (255 aa)
     
 
  0.632
Bra007499
AT3G59990 (E=2e-205) MAP2B | MAP2B (METHIONINE AMINOPEPTIDASE 2B); aminopeptidase/ metalloexopeptidase ; Cotranslationally removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val) (441 aa)
     
 
  0.632
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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