STRINGSTRING
Bra008472 protein (Brassica rapa) - STRING interaction network
"Bra008472" - AT1G80460 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008472AT1G80460 (E=4e-218) NHO1, GLI1 | NHO1 (nonhost resistance to P. s. phaseolicola 1); carbohydrate kinase/ glycerol kinase (448 aa)    
Predicted Functional Partners:
Bra034109
AT3G10370 (E=0.0) SDP6 | SDP6 (SUGAR-DEPENDENT 6); glycerol-3-phosphate dehydrogenase (630 aa)
  0.904
Bra029833
AT3G10370 (E=0.0) SDP6 | SDP6 (SUGAR-DEPENDENT 6); glycerol-3-phosphate dehydrogenase (631 aa)
  0.903
Bra035180
AT3G10370 (E=1e-304) SDP6 | SDP6 (SUGAR-DEPENDENT 6); glycerol-3-phosphate dehydrogenase (620 aa)
  0.903
Bra040150
AT3G04090 (E=1e-093) SIP1;1, SIP1A | SIP1A (SMALL AND BASIC INTRINSIC PROTEIN 1A); water channel (254 aa)
   
 
  0.874
Bra039301
AT2G45960 (E=2e-138) PIP1B, TMP-A, ATHH2, PIP1;2 | PIP1B (NAMED PLASMA MEMBRANE INTRINSIC PROTEIN 1B); water channel (280 aa)
   
 
  0.874
Bra037415
AT4G01470 (E=1e-118) GAMMA-TIP3, TIP1;3 | TIP1;3 (TONOPLAST INTRINSIC PROTEIN 1;3); urea transmembrane transporter/ water channel (252 aa)
   
 
  0.874
Bra035520
AT1G31885 (E=5e-154) | transporter (323 aa)
   
 
  0.874
Bra035156
AT1G80760 (E=2e-149) NIP6;1, NIP6, NLM7 | NIP6;1 (NOD26-LIKE INTRINSIC PROTEIN 6;1); boron transporter/ glycerol transmembrane transporter/ urea transmembrane transporter/ water channel/ water transporter (305 aa)
   
 
  0.874
Bra034675
AT4G35100 (E=4e-153) PIP3, PIP3A, PIP2;7, SIMIP | PIP3 (PLASMA MEMBRANE INTRINSIC PROTEIN 3); water channel (281 aa)
   
 
  0.874
Bra034271
AT2G25810 (E=8e-105) TIP4;1 | TIP4;1 (tonoplast intrinsic protein 4;1); water channel (249 aa)
   
 
  0.874
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (7%) [HD]