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Bra008474 protein (Brassica rapa) - STRING interaction network
"Bra008474" - AT1G80410 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008474AT1G80410 (E=0.0) EMB2753 | EMB2753 (EMBRYO DEFECTIVE 2753); binding (1274 aa)    
Predicted Functional Partners:
Bra027296
AT3G14890 (E=3e-166) | phosphoesterase (602 aa)
     
  0.981
Bra001572
AT3G14890 (E=7e-126) | phosphoesterase (460 aa)
     
  0.981
Bra009639
AT5G01310 (E=2e-312) | basic helix-loop-helix (bHLH) family protein (680 aa)
       
  0.979
Bra023435
AT5G13780 (E=3e-089) | GCN5-related N-acetyltransferase, putative (194 aa)
       
 
  0.955
Bra008803
AT5G13780 (E=1e-082) | GCN5-related N-acetyltransferase, putative (167 aa)
       
 
  0.955
Bra033377
AT1G03150 (E=1e-098) | GCN5-related N-acetyltransferase (GNAT) family protein (283 aa)
       
 
  0.944
Bra030521
AT1G03150 (E=2e-063) | GCN5-related N-acetyltransferase (GNAT) family protein (117 aa)
       
 
  0.944
Bra040280
AT3G06610 (E=1e-038) | DNA-binding enhancer protein-related (115 aa)
       
 
  0.943
Bra029592
AT3G06610 (E=7e-038) | DNA-binding enhancer protein-related (115 aa)
       
 
  0.943
Bra032548
AT1G03650 (E=2e-077) | GCN5-related N-acetyltransferase (GNAT) family protein (158 aa)
       
 
  0.942
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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