STRINGSTRING
Bra008476 protein (Brassica rapa) - STRING interaction network
"Bra008476" - AT1G80380 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008476AT1G80380 (E=6e-198) | phosphoribulokinase/uridine kinase-related (457 aa)    
Predicted Functional Partners:
Bra003537
AT1G79870 (E=1e-140) | oxidoreductase family protein (313 aa)
   
 
  0.911
Bra035206
AT1G79870 (E=1e-148) | oxidoreductase family protein (310 aa)
   
 
  0.909
Bra033861
AT1G32060 (E=2e-196) PRK | PRK (PHOSPHORIBULOKINASE); ATP binding / phosphoribulokinase/ protein binding (395 aa)
     
 
  0.907
Bra023235
AT1G32060 (E=3e-210) PRK | PRK (PHOSPHORIBULOKINASE); ATP binding / phosphoribulokinase/ protein binding (397 aa)
     
 
  0.907
Bra004275
AT1G68010 (E=9e-208) HPR | HPR; glycerate dehydrogenase/ poly(U) binding (386 aa)
   
 
  0.907
Bra004055
AT1G68010 (E=5e-209) HPR | HPR; glycerate dehydrogenase/ poly(U) binding (386 aa)
   
 
  0.907
Bra019774
AT1G12550 (E=1e-072) | oxidoreductase family protein (345 aa)
   
 
  0.903
Bra030016
AT3G50520 (E=5e-117) | phosphoglycerate/bisphosphoglycerate mutase family protein (228 aa)
     
 
    0.896
Bra022066
AT5G04120 (E=3e-110) | phosphoglycerate/bisphosphoglycerate mutase family protein (236 aa)
     
 
    0.896
Bra020200
AT5G22620 (E=4e-135) | phosphoglycerate/bisphosphoglycerate mutase family protein (419 aa)
     
 
    0.896
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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