STRINGSTRING
Bra008479 protein (Brassica rapa) - STRING interaction network
"Bra008479" - AT1G80350 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008479AT1G80350 (E=1e-247) ERH3, AAA1, FRA2, LUE1, ATKTN1, KTN1, FRC2, BOT1, FTR | ERH3 (ECTOPIC ROOT HAIR 3); ATP binding / nucleoside-triphosphatase/ nucleotide binding ; Severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays (528 aa)    
Predicted Functional Partners:
Bra031445
AT1G61210 (E=0.0) | WD-40 repeat family protein / katanin p80 subunit, putative ; May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays (1122 aa)
     
 
  0.950
Bra005990
AT5G08390 (E=2e-222) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- CUL4 RING ubiquitin ligase complex; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- WD40 repeat-like (InterPro-IPR011046), WD40 repeat, region (InterPro-IPR017986), WD40/YVTN repeat-like (InterPro-IPR015943), WD40 repeat (InterPro-IPR001680); BEST Arabidopsis thaliana protein match is- transducin family protein / WD-40 repeat family protein (TAIR-AT5G23430.1); Has 84267 Blast hits to 30722 proteins in 748 species- Archa [...] (848 aa)
     
 
  0.950
Bra031757
AT1G11130 (E=9e-226) SUB, SCM, SRF9 | SUB (STRUBBELIG); protein binding / receptor signaling protein serine/threonine kinase ; May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays (1378 aa)
     
 
  0.949
Bra009683
AT5G23430 (E=0.0) | transducin family protein / WD-40 repeat family protein ; May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays (906 aa)
     
 
  0.949
Bra005494
AT2G33460 (E=3e-074) RIC1 | RIC1 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 1); protein binding (216 aa)
       
      0.625
Bra015282
AT1G03982 (E=6e-043) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; CONTAINS InterPro DOMAIN/s- PAK-box/P21-Rho-binding (InterPro-IPR000095); BEST Arabidopsis thaliana protein match is- RIC6 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 6) (TAIR-AT2G20430.1); Has 96 Blast hits to 96 proteins in 15 species- Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 86; Viruses - 0; Other Eukaryotes - 8 (source- NCBI BLink). (190 aa)
       
      0.612
Bra001910
AT3G23380 (E=5e-059) RIC5 | RIC5 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 5); protein binding (183 aa)
       
      0.612
Bra039487
AT5G35980 (E=0.0) YAK1 | protein kinase family protein (939 aa)
       
 
  0.556
Bra035364
AT5G35980 (E=0.0) YAK1 | protein kinase family protein (906 aa)
       
 
  0.556
Bra022240
AT3G17750 (E=2e-215) | protein kinase family protein (1039 aa)
       
 
  0.556
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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