STRINGSTRING
Bra008483 protein (Brassica rapa) - STRING interaction network
"Bra008483" - AT1G80290 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008483AT1G80290 (E=5e-147) | glycosyltransferase family protein 47 (341 aa)    
Predicted Functional Partners:
Bra019593
AT3G49370 (E=3e-291) | calcium-dependent protein kinase, putative / CDPK, putative (651 aa)
           
  0.504
Bra018963
AT1G52320 (E=4e-244) | unknown protein (750 aa)
           
  0.504
Bra017989
AT3G49370 (E=4e-294) | calcium-dependent protein kinase, putative / CDPK, putative (591 aa)
           
  0.504
Bra009448
AT5G04500 (E=0.0) | glycosyltransferase family protein 47 (763 aa)
         
0.484
Bra009853
AT5G25590 (E=3e-233) | INVOLVED IN- N-terminal protein myristoylation; EXPRESSED IN- 20 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Protein of unknown function DUF630 (InterPro-IPR006868), Protein of unknown function DUF632 (InterPro-IPR006867), Actin-binding FH2 (InterPro-IPR015425); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT1G52320.4); Has 31848 Blast hits to 18905 proteins in 762 species- Archae - 79; Bacteria - 761; Metazoa - 15943; Fungi - 3494; Plants - 1748; Viruses - 431; Other Eukaryotes - 9392 (source- NCBI BLink). (735 aa)
           
  0.483
Bra039458
AT3G05140 (E=2e-202) RBK2 | RBK2 (Rop Binding protein Kinases 2); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase (500 aa)
           
  0.483
Bra028787
AT5G04500 (E=0.0) | glycosyltransferase family protein 47 (717 aa)
         
0.453
Bra007194
AT3G55830 (E=5e-173) EPC1 | EPC1 (ECTOPICALLY PARTING CELLS); UDP-glucosyltransferase/ transferase, transferring glycosyl groups (330 aa)
         
0.443
Bra030055
AT1G27600 (E=1e-167) | glycosyl transferase family 43 protein (385 aa)
           
  0.424
Bra012145
AT5G67230 (E=5e-193) | glycosyl transferase family 43 protein (472 aa)
           
  0.424
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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