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Bra008485 protein (Brassica rapa) - STRING interaction network
"Bra008485" - AT1G80260 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008485AT1G80260 (E=0.0) emb1427 | emb1427 (embryo defective 1427); tubulin binding ; Gamma-tubulin complex is necessary for microtubule nucleation at the centrosome (1088 aa)    
Predicted Functional Partners:
Bra007026
AT3G53760 (E=0.0) | tubulin family protein ; Gamma-tubulin complex is necessary for microtubule nucleation at the centrosome (1000 aa)
     
0.955
Bra013980
AT5G17410 (E=1e-074) | tubulin family protein ; Gamma-tubulin complex is necessary for microtubule nucleation at the centrosome (541 aa)
     
  0.888
Bra006406
AT5G17410 (E=6e-242) | tubulin family protein ; Gamma-tubulin complex is necessary for microtubule nucleation at the centrosome (606 aa)
     
  0.888
Bra034848
AT5G05970 (E=0.0) NEDD1 | NEDD1 (NEURAL PRECURSOR CELL EXPRESSED, DEVELOPMENTALLY DOWN-REGULATED GENE 1); nucleotide binding (1183 aa)
     
    0.879
Bra009155
AT5G05970 (E=1e-297) NEDD1 | NEDD1 (NEURAL PRECURSOR CELL EXPRESSED, DEVELOPMENTALLY DOWN-REGULATED GENE 1); nucleotide binding (729 aa)
     
    0.878
Bra009216
AT5G06680 (E=5e-099) SPC98, ATGCP3, ATSPC98, GCP3 | SPC98 (SPINDLE POLE BODY COMPONENT 98); tubulin binding ; Gamma-tubulin complex is necessary for microtubule nucleation at the centrosome (643 aa)
     
  0.829
Bra018111
AT3G43610 (E=0.0) | tubulin binding (1214 aa)
     
0.825
Bra028722
AT5G06680 (E=4e-286) SPC98, ATGCP3, ATSPC98, GCP3 | SPC98 (SPINDLE POLE BODY COMPONENT 98); tubulin binding ; Gamma-tubulin complex is necessary for microtubule nucleation at the centrosome (611 aa)
     
0.820
Bra007622
AT3G61650 (E=2e-273) TUBG1 | TUBG1 (GAMMA-TUBULIN); GTP binding / GTPase/ structural molecule ; Tubulin is the major constituent of microtubules. The gamma chain is found at microtubule organizing centers (MTOC) such as the spindle poles or the centrosome (473 aa)
     
  0.629
Bra015965
AT1G73790 (E=7e-023) | unknown protein (69 aa)
     
      0.627
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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