STRINGSTRING
Bra008495 protein (Brassica rapa) - STRING interaction network
"Bra008495" - AT1G80130 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008495AT1G80130 (E=2e-091) | binding (302 aa)    
Predicted Functional Partners:
Bra039888
AT1G42430 (E=5e-226) | unknown protein (411 aa)
           
  0.526
Bra006966
AT3G53000 (E=2e-154) AtPP2-A15 | AtPP2-A15 (Phloem protein 2-A15); carbohydrate binding (301 aa)
           
  0.478
Bra016121
AT1G71740 (E=4e-053) | unknown protein (133 aa)
           
  0.418
Bra034677
AT4G35160 (E=9e-184) | O-methyltransferase family 2 protein (368 aa)
           
  0.414
Bra017700
AT4G35160 (E=3e-187) | O-methyltransferase family 2 protein (367 aa)
           
  0.414
Bra017699
AT4G35160 (E=4e-184) | O-methyltransferase family 2 protein (366 aa)
           
  0.414
Bra011408
AT4G33040 (E=7e-056) | glutaredoxin family protein (143 aa)
     
   
  0.407
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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