STRINGSTRING
Bra008496 protein (Brassica rapa) - STRING interaction network
"Bra008496" - AT5G22950 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008496AT5G22950 (E=4e-014) VPS24.1 | VPS24.1 (79 aa)    
Predicted Functional Partners:
Bra039023
AT2G19830 (E=2e-074) SNF7.2, VPS32 | SNF7.2 (215 aa)
     
  0.978
Bra036700
AT2G19830 (E=7e-082) SNF7.2, VPS32 | SNF7.2 (212 aa)
     
  0.978
Bra024160
AT4G29160 (E=7e-067) SNF7.1 | SNF7.1 (213 aa)
     
  0.978
Bra015055
AT4G29160 (E=9e-040) SNF7.1 | SNF7.1 (156 aa)
     
  0.978
Bra011085
AT4G29160 (E=3e-066) SNF7.1 | SNF7.1 (212 aa)
     
  0.978
Bra033752
AT5G44560 (E=4e-070) VPS2.2 | VPS2.2 (207 aa)
     
  0.976
Bra027559
AT5G44560 (E=1e-098) VPS2.2 | VPS2.2 (224 aa)
     
  0.976
Bra020925
AT5G44560 (E=6e-107) VPS2.2 | VPS2.2 (223 aa)
     
  0.976
Bra015280
AT1G03950 (E=1e-092) VPS2.3 | VPS2.3 (VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 2.3) (211 aa)
     
  0.976
Bra013459
AT5G44560 (E=2e-085) VPS2.2 | VPS2.2 (197 aa)
     
  0.976
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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