STRINGSTRING
Bra008500 protein (Brassica rapa) - STRING interaction network
"Bra008500" - AT1G79960 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008500AT1G79960 (E=2e-064) ATOFP14, OFP14 | OFP14 (OVATE FAMILY PROTEIN 14) (295 aa)    
Predicted Functional Partners:
Bra006930
AT3G52540 (E=3e-053) ATOFP18, OFP18 | OFP18 (OVATE FAMILY PROTEIN 18) (258 aa)
           
  0.483
Bra020055
AT5G19650 (E=5e-042) ATOFP8, OFP8 | OFP8 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 8) (206 aa)
           
  0.465
Bra002252
AT5G19650 (E=1e-065) ATOFP8, OFP8 | OFP8 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 8) (213 aa)
           
  0.465
Bra021631
AT2G30395 (E=9e-079) ATOFP17, OFP17 | OFP17 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 17) (196 aa)
           
  0.443
Bra018317
AT2G30395 (E=2e-073) ATOFP17, OFP17 | OFP17 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 17) (203 aa)
           
  0.443
Bra020989
AT4G18830 (E=5e-106) ATOFP5, OFP5 | OFP5 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 5) (321 aa)
           
  0.429
Bra013354
AT4G18830 (E=4e-130) ATOFP5, OFP5 | OFP5 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 5) (326 aa)
           
  0.429
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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