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Bra008501 protein (Brassica rapa) - STRING interaction network
"Bra008501" - AT1G79940 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008501AT1G79940 (E=3e-025) ATERDJ2A | ATERDJ2A; heat shock protein binding / unfolded protein binding (357 aa)    
Predicted Functional Partners:
Bra031243
AT3G20920 (E=7e-180) | translocation protein-related (357 aa)
     
  0.997
Bra023912
AT3G20920 (E=1e-124) | translocation protein-related (316 aa)
     
  0.997
Bra001807
AT3G20920 (E=3e-161) | translocation protein-related (344 aa)
     
  0.997
Bra032303
AT1G29310 (E=1e-267) | P-P-bond-hydrolysis-driven protein transmembrane transporter (475 aa)
     
  0.997
Bra005441
AT2G34250 (E=1e-270) | protein transport protein sec61, putative (475 aa)
     
  0.997
Bra021898
AT2G34250 (E=1e-268) | protein transport protein sec61, putative (475 aa)
     
  0.997
Bra005441.1-P
AT2G34250 (E=1e-270) | protein transport protein sec61, putative (475 aa)
     
  0.997
Bra003505
AT2G34250 (E=4e-196) | protein transport protein sec61, putative (469 aa)
     
  0.997
Bra040326
AT3G60540 (E=1e-018) | sec61beta family protein (83 aa)
     
  0.996
Bra006659
AT5G60460 (E=4e-022) | sec61beta family protein (109 aa)
     
  0.996
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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