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Bra008506 protein (Brassica rapa) - STRING interaction network
"Bra008506" - AT1G64790 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008506AT1G64790 (E=0.0) | binding (2613 aa)    
Predicted Functional Partners:
Bra007447
AT3G59410 (E=0.0) | protein kinase family protein (1243 aa)
     
 
  0.946
Bra021434
AT3G02760 (E=0.0) | ATP binding / aminoacyl-tRNA ligase/ histidine-tRNA ligase/ nucleotide binding (871 aa)
     
 
  0.922
Bra010749
AT3G46100 (E=2e-212) ATHRS1 | ATHRS1 (HISTIDYL-TRNA SYNTHETASE 1); histidine-tRNA ligase (487 aa)
     
 
  0.922
Bra001061
AT3G02760 (E=0.0) | ATP binding / aminoacyl-tRNA ligase/ histidine-tRNA ligase/ nucleotide binding (858 aa)
     
 
  0.922
Bra031676
AT1G09640 (E=9e-204) | elongation factor 1B-gamma, putative / eEF-1B gamma, putative (413 aa)
     
 
  0.921
Bra030790
AT1G57720 (E=6e-190) | elongation factor 1B-gamma, putative / eEF-1B gamma, putative (566 aa)
     
 
  0.921
Bra020005
AT1G09640 (E=4e-193) | elongation factor 1B-gamma, putative / eEF-1B gamma, putative (413 aa)
     
 
  0.921
Bra020079
AT5G19990 (E=6e-228) RPT6A, ATSUG1 | RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A); ATPase (721 aa)
     
 
  0.908
Bra030422
AT1G51730 (E=2e-098) | RWD domain-containing protein (247 aa)
       
 
  0.903
Bra018928
AT1G51730 (E=2e-027) | RWD domain-containing protein (177 aa)
       
 
  0.903
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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