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Bra008508 protein (Brassica rapa) - STRING interaction network
"Bra008508" - AT5G45010 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008508AT5G45010 (E=6e-011) ATDSS1(V) | ATDSS1(V) (Arabidopsis dss1 homolog on chromosome V) (75 aa)    
Predicted Functional Partners:
Bra032291
AT1G29150 (E=4e-200) ATS9, RPN6 | ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9) (419 aa)
       
  0.954
Bra010849
AT1G29150 (E=9e-204) ATS9, RPN6 | ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9) (419 aa)
       
  0.954
Bra040915
AT1G64520 (E=9e-131) RPN12a | RPN12a (Regulatory Particle non-ATPase 12a); peptidase (267 aa)
       
  0.951
Bra027705
AT1G64520 (E=8e-130) RPN12a | RPN12a (Regulatory Particle non-ATPase 12a); peptidase (267 aa)
       
  0.951
Bra019207
AT4G24820 (E=5e-208) | 26S proteasome regulatory subunit, putative (RPN7) (387 aa)
     
  0.950
Bra013838
AT4G24820 (E=8e-209) | 26S proteasome regulatory subunit, putative (RPN7) (387 aa)
     
  0.950
Bra033573
AT4G38630 (E=2e-141) RPN10, MCB1, ATMCB1, MBP1 | RPN10 (REGULATORY PARTICLE NON-ATPASE 10); peptide receptor (381 aa)
     
    0.950
Bra010735
AT4G38630 (E=8e-146) RPN10, MCB1, ATMCB1, MBP1 | RPN10 (REGULATORY PARTICLE NON-ATPASE 10); peptide receptor (383 aa)
     
    0.950
Bra034316
AT2G27020 (E=3e-124) PAG1 | PAG1; endopeptidase/ peptidase/ threonine-type endopeptidase (249 aa)
     
    0.945
Bra038919
AT1G56450 (E=2e-077) PBG1 | PBG1; peptidase/ threonine-type endopeptidase (148 aa)
     
    0.944
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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