STRINGSTRING
Bra008511 protein (Brassica rapa) - STRING interaction network
"Bra008511" - AT2G33130 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008511AT2G33130 (E=8e-021) RALFL18 | RALFL18 (ralf-like 18); signal transducer (102 aa)    
Predicted Functional Partners:
Bra033537
AT4G16146 (E=3e-026) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 24 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Lg106-like (InterPro-IPR012482); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT1G69510.3); Has 94 Blast hits to 94 proteins in 12 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 94; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink). (119 aa)
           
  0.456
Bra038962
AT4G14020 (E=3e-027) | rapid alkalinization factor (RALF) family protein (115 aa)
           
  0.408
Bra015112
AT3G25170 (E=1e-023) RALFL26 | RALFL26 (ralf-like 26); signal transducer (74 aa)
           
  0.408
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (13%) [HD]