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Bra008513 protein (Brassica rapa) - STRING interaction network
"Bra008513" - AT1G64860 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008513AT1G64860 (E=4e-182) SIGA, SIG1, SIG2, SIGB, RPOD1 | SIGA (SIGMA FACTOR A); DNA binding / DNA-directed RNA polymerase/ sigma factor/ transcription factor (492 aa)    
Predicted Functional Partners:
Bra040978
ATCG00740 (E=1e-124) RPOA | RNA polymerase alpha subunit (475 aa)
     
 
  0.948
Bra011638
AT4G35800 (E=0.0) NRPB1, RPB1, RNA_POL_II_LSRNA_POL_II_LS, RNA_POL_II_LS | NRPB1 (RNA POLYMERASE II LARGE SUBUNIT); DNA binding / DNA-directed RNA polymerase ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (2709 aa)
     
 
  0.945
Bra040822
AT2G20050 (E=0.0) | ATP binding / cAMP-dependent protein kinase regulator/ catalytic/ protein kinase/ protein serine/threonine phosphatase (966 aa)
       
  0.936
Bra039057
AT5G51940 (E=1e-057) NRPB6A, NRPD6A, NRPE6A | NRPB6A; DNA binding / DNA-directed RNA polymerase (144 aa)
       
 
  0.923
Bra025617
AT5G51940 (E=2e-065) NRPB6A, NRPD6A, NRPE6A | NRPB6A; DNA binding / DNA-directed RNA polymerase (144 aa)
       
 
  0.923
Bra040351
AT1G60620 (E=7e-042) ATRPAC43 | ATRPAC43; DNA binding / DNA-directed RNA polymerase/ protein dimerization (343 aa)
     
 
  0.919
Bra039839
AT2G15430 (E=5e-166) RBP36A, RPB35.5A, NRPB3, NRPD3, NRPE3A | NRPB3; DNA binding / DNA-directed RNA polymerase/ protein dimerization (321 aa)
     
 
  0.919
Bra031493
AT1G60620 (E=1e-145) ATRPAC43 | ATRPAC43; DNA binding / DNA-directed RNA polymerase/ protein dimerization (399 aa)
     
 
  0.919
Bra027125
AT1G60850 (E=2e-168) ATRPAC42, AAC42 | ATRPAC42; DNA binding / DNA-directed RNA polymerase/ protein dimerization (382 aa)
     
 
  0.919
Bra015218
AT2G15430 (E=1e-167) RBP36A, RPB35.5A, NRPB3, NRPD3, NRPE3A | NRPB3; DNA binding / DNA-directed RNA polymerase/ protein dimerization (319 aa)
     
 
  0.919
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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